Major Resources

Hardware

Number of nodes CPU
Processor
Memory
Storage
3
16
Intel Xeon L5520 @ 2.27GHz
47GB
2.0TB
1
24
Intel Xeon X5650 @ 2.67GHz
70GB
7.1TB
1
24
Intel Xeon X5690 @ 3.47GHz
141GB
6.4TB
1
24
Intel Xeon X7542 @ 2.67GHz
126GB
4.3TB

External storage

40TB

 Proprietary software licenses

Ingenuity IPA Pathway analysis tool
Partek Genomic Suite Microarray, Next Gen Sequencing (NGS), Integrated Genomics analysis tool
CLC Genomics Workbench NGS data analysis tool
MATLAB Technical computing tool
Mplus Statistical computing tool
SPSS Statistical computing tool
SAS Statistical computing tool

Open source software

R Statistical computing tool
FastQC Quality control tool for high-throughput sequence data
Bowtie Fast short read aligner for high-throughput sequencing data
BWA Fast short read aligner for high-throughput sequencing data
STAR De novo Splice Aligner
TopHat De novo Splice Aligner
Cufflinks Transcript abundance estimator
Cuffdiff Performs differential gene expression analysis
DESeq Performs differential gene expression analysis
EdgeR Performs differential gene expression analysis

 


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